PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G310400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 469aa    MW: 49812.1 Da    PI: 8.1935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G310400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.6e-125278127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        +++++C +++rtG C+yG++C+++H++
  Brast01G310400.1.p 52 PGEANCIYYLRTGACSYGESCRYNHPR 78
                        5789*********************96 PP
2zf-CCCH39.78.3e-13102128127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC +++++GtCk+G++Ck++H++
  Brast01G310400.1.p 102 PGQPLCEYYMKNGTCKFGSNCKYNHPR 128
                         589**********************96 PP
3zf-CCCH34.43.8e-11148172226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+++ +tG+Ck+G++CkF+H+
  Brast01G310400.1.p 148 GEKECSYYIKTGHCKFGSTCKFHHP 172
                         7899********************9 PP
4zf-CCCH38.61.8e-12302328127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++tGtCk+G++Ck++H++
  Brast01G310400.1.p 302 PGQPECHHYMKTGTCKFGATCKYNHPQ 328
                         5789*********************97 PP
5zf-CCCH30.65.7e-10353373626
                         -SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                         C ++++ G+Ck+G+rCkF H+
  Brast01G310400.1.p 353 CVYYSQHGFCKFGPRCKFDHP 373
                         99******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-55178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3715179IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-95378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-45778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99101129IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7101128IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-6106129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4146173IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8148172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4152171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953301329IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5301328IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5305328IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474347375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6350377IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-7352373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4353372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MMEPYTSPRD NSSGGGGEGG GRADPDTGLE ESMWRLGLGG GGEAAPRLPE RPGEANCIYY  60
LRTGACSYGE SCRYNHPRDR AAAFNGGART TPAVGVEYPE RPGQPLCEYY MKNGTCKFGS  120
NCKYNHPREG GPVQPVVLNT SGYPLRPGEK ECSYYIKTGH CKFGSTCKFH HPDGPELGVV  180
SETLSMYPPA QPLPMSSPLS YPPLASWQLG RPSVLPGSFY QGSYPPMVHP SAVIPMQGWN  240
PYMSSMNQLA SAGGQQNVQA GPLYGLSHQG PSSSVAYGSN YAPLPSSTWP SSNKQVAFPE  300
RPGQPECHHY MKTGTCKFGA TCKYNHPQYL SAPNSNCMLS PLGLPIRPGA QQCVYYSQHG  360
FCKFGPRCKF DHPLGTLSYS PSASSLTDVP VAPYPLSLPV AAMAPSPSSS SLRPEYILTL  420
DPSVNQPASP GTAFGPAGSV PKICAPHMLL RPPTSTTVAT VTSHGGGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G310400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.20.0uncharacterized protein LOC100827764
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0Q3ITE30.0A0A0Q3ITE3_BRADI; Uncharacterized protein
STRINGBRADI2G09340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]