PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G316100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 166aa    MW: 17911.1 Da    PI: 8.491
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G316100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.9e-096788627
                        -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                        C++f rtGtCk+Gd+C++ H++
  Brast01G316100.1.p 67 CNHFVRTGTCKFGDSCRYFHPK 88
                        ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.9E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576676.55E-15449No hitNo description
PfamPF062204.6E-9537IPR013085Zinc finger, U1-C type
SMARTSM003562.4E-46388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-76489IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4936689IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-76688IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-66686IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARRRHLQGAQ HHRARALWYD SIRRQESIGG ASPFLQPDAA  60
ILAKGVCNHF VRTGTCKFGD SCRYFHPKPH AVNPASAPSG PVPGAVMQQS NFLGTQPNII  120
GYQAAEINSF SGNILGGHAS WGNLPPSLQP PPDGGHPSLP FIDWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G316100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230700.11e-114zinc finger CCCH domain-containing protein 3
SwissprotQ0JP115e-78C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLI1HDY31e-113I1HDY3_BRADI; Uncharacterized protein
STRINGBRADI2G08905.11e-114(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.18e-42C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]