PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G321000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 235aa    MW: 24372.2 Da    PI: 9.4688
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G321000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.53.8e-3220119199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleql 90 
                         aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ ++ l+++ + l
  Brast01G321000.1.p  20 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRENAVL 110
                         7**********************************************9977766************************************* PP

              DUF260  91 kaelallke 99 
                         +ae a+l++
  Brast01G321000.1.p 111 RAENAALRR 119
                         **9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.36419121IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-2920117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTGGVNGNGG TGNGNGGGGA CAVCKHQRRK CEPNCELAAY FPANRMNDFR ALHLVFGVAN  60
LTKLIKANAT EAARRRAAET LTWEARWRER DPSEGCYREV SCLRRENAVL RAENAALRRR  120
ADQCASCCCG TTLQQQQQQQ QMLLVSAYNG ARPPVLHGAS NGGVLPGSFV GGGCYNNNNN  180
NAGGGGRVAN GNVPPARPPV AQSTMIGYHA VSNGAAGAGA GAGQADSRDK SGAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-17161137103LOB family transfactor Ramosa2.1
5ly0_B5e-17161137103LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G321000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-154HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314390.11e-124LOB domain-containing protein 7
TrEMBLI1HDS91e-123I1HDS9_BRADI; Uncharacterized protein
STRINGBRADI2G08480.11e-124(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-15LOB domain-containing protein 2