PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G325800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 760aa    MW: 84439.7 Da    PI: 8.6268
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G325800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.4e-20176276198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f k+ltpsd++++g +++ +++a+e+      ++ ++ +++l+ +d  g +W++k+iyr++++r++lt+GW+ Fv +++L  gD +v    
  Brast01G325800.1.p 176 FSKILTPSDTSTHGGFSVLRRHANEClppldmSM-PTPTQELICKDILGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVYGDAFVYL-- 263
                         88****************************9644.445569********************************************9999.. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                         +++e+e +v+v+ 
  Brast01G325800.1.p 264 RTEEGEQRVGVRH 276
                         4578888999986 PP
2Auxin_resp851.5e-28302381181
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                         a+ha++tks+F v+Y+Pr+s+s+++v+v+k+  + k +++vG+Rfkm+fe+e+++ +++sGt+vg  +++p +W+ S+W+s
  Brast01G325800.1.p 302 ASHALQTKSIFLVYYRPRVSQSQYIVSVNKYFLTSKLRYTVGTRFKMSFEGEEVPVKKFSGTIVGDGAVSP-QWSCSEWKS 381
                         789********************************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-33169305IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-33172290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-15174275No hitNo description
PfamPF023629.8E-18176276IPR003340B3 DNA binding domain
SMARTSM010197.9E-14176278IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588176278IPR003340B3 DNA binding domain
PfamPF065071.7E-24302381IPR010525Auxin response factor
PfamPF023093.6E-7634688IPR033389AUX/IAA domain
PROSITE profilePS5174523.291651731IPR000270PB1 domain
SuperFamilySSF542771.06E-9652724No hitNo description
Gene3DG3DSA:3.10.20.2407.1E-4653712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MMDRGEPTNK HTPPVTRANH QTTSLPRLAS SGRQAFASRP SSSLPKMTPP VTMPRGAGGR  60
DAELFSELWR ACAGPLVELP QPGQRVFYFL QGHLEQVLGS VVQQSSEQKV LADQIRMFQV  120
PYKILCRVVN VELKAEVETE EVYAQITLLP EQDQEKLPTT PDPPLKEVRR PVVHSFSKIL  180
TPSDTSTHGG FSVLRRHANE CLPPLDMSMP TPTQELICKD ILGSEWRFKH IYRGQPRRHL  240
LTTGWSTFVT SKKLVYGDAF VYLRTEEGEQ RVGVRHHVQK RTAMPASVMS SQSMHFGVLA  300
SASHALQTKS IFLVYYRPRV SQSQYIVSVN KYFLTSKLRY TVGTRFKMSF EGEEVPVKKF  360
SGTIVGDGAV SPQWSCSEWK SKKVQWDDPA NCTGPERVSP WEIEPADRPA STVTVPSTRN  420
KRPRETTEDL DLQSLNPTTQ KSWLSGMPRQ HDKTVAGPSN PNRMIPGNQV IWPGERAGYG  480
AMGSSSFCQK PLVRESWLDE YNPSRQALSP TLSEISQKLY QVTRNEGRAS PWPVLPAYQA  540
QQPALRLPCN STALRNYQTE EAGPSLPPKV TEKSKEPGMV RLFGVNLMKP TSGTATAADN  600
AGAEAGETSA RVAGPNEESG QVSAVSRVTK DHKVANESPR EIQSNQSCIA RNRVKVQMHG  660
NAVGRAVDLA NLDGYEQLIR ELEQMFDIKD IKQNFKVAFT DNDGDTMKVG DDPWMEFCQM  720
VKKIVIYPIE EEKTEPLQPP ISAAAAADAT PELDAKTES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1436440719356Auxin response factor 1
4ldw_A1e-1436440719356Auxin response factor 1
4ldw_B1e-1436440719356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G325800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230667.10.0auxin response factor 1 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2K2D7I10.0A0A2K2D7I1_BRADI; Auxin response factor
STRINGBRADI2G08120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-173auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]