PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G325800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 754aa    MW: 83913.1 Da    PI: 8.6268
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G325800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.4e-20170270198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f k+ltpsd++++g +++ +++a+e+      ++ ++ +++l+ +d  g +W++k+iyr++++r++lt+GW+ Fv +++L  gD +v    
  Brast01G325800.2.p 170 FSKILTPSDTSTHGGFSVLRRHANEClppldmSM-PTPTQELICKDILGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVYGDAFVYL-- 257
                         88****************************9644.445569********************************************9999.. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                         +++e+e +v+v+ 
  Brast01G325800.2.p 258 RTEEGEQRVGVRH 270
                         4578888999986 PP
2Auxin_resp851.5e-28296375181
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                         a+ha++tks+F v+Y+Pr+s+s+++v+v+k+  + k +++vG+Rfkm+fe+e+++ +++sGt+vg  +++p +W+ S+W+s
  Brast01G325800.2.p 296 ASHALQTKSIFLVYYRPRVSQSQYIVSVNKYFLTSKLRYTVGTRFKMSFEGEEVPVKKFSGTIVGDGAVSP-QWSCSEWKS 375
                         789********************************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-33163299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-33166284IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-15168269No hitNo description
SMARTSM010197.9E-14170272IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588170272IPR003340B3 DNA binding domain
PfamPF023629.6E-18170270IPR003340B3 DNA binding domain
PfamPF065071.6E-24296375IPR010525Auxin response factor
PfamPF023093.6E-7628682IPR033389AUX/IAA domain
PROSITE profilePS5174523.291645725IPR000270PB1 domain
SuperFamilySSF542771.02E-9646718No hitNo description
Gene3DG3DSA:3.10.20.2407.0E-4647706No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MMDRGEPTNK HTPPVTRANH QTTSLPRLAS SGRQAFASRP SSSLPKMTPP VTMPRGGGRD  60
AELFSELWRA CAGPLVELPQ PGQRVFYFLQ GHLEQVQQSS EQKVLADQIR MFQVPYKILC  120
RVVNVELKAE VETEEVYAQI TLLPEQDQEK LPTTPDPPLK EVRRPVVHSF SKILTPSDTS  180
THGGFSVLRR HANECLPPLD MSMPTPTQEL ICKDILGSEW RFKHIYRGQP RRHLLTTGWS  240
TFVTSKKLVY GDAFVYLRTE EGEQRVGVRH HVQKRTAMPA SVMSSQSMHF GVLASASHAL  300
QTKSIFLVYY RPRVSQSQYI VSVNKYFLTS KLRYTVGTRF KMSFEGEEVP VKKFSGTIVG  360
DGAVSPQWSC SEWKSKKVQW DDPANCTGPE RVSPWEIEPA DRPASTVTVP STRNKRPRET  420
TEDLDLQSLN PTTQKSWLSG MPRQHDKTVA GPSNPNRMIP GNQVIWPGER AGYGAMGSSS  480
FCQKPLVRES WLDEYNPSRQ ALSPTLSEIS QKLYQVTRNE GRASPWPVLP AYQAQQPALR  540
LPCNSTALRN YQTEEAGPSL PPKVTEKSKE PGMVRLFGVN LMKPTSGTAT AADNAGAEAG  600
ETSARVAGPN EESGQVSAVS RVTKDHKVAN ESPREIQSNQ SCIARNRVKV QMHGNAVGRA  660
VDLANLDGYE QLIRELEQMF DIKDIKQNFK VAFTDNDGDT MKVGDDPWME FCQMVKKIVI  720
YPIEEEKTEP LQPPISAAAA ADATPELDAK TES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1455640112356Auxin response factor 1
4ldw_A1e-1455640112356Auxin response factor 1
4ldw_B1e-1455640112356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G325800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565543.20.0auxin response factor 1 isoform X3
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0Q3FVN50.0A0A0Q3FVN5_BRADI; Auxin response factor
STRINGBRADI2G08120.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-175auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]