PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G325800.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 759aa    MW: 84368.7 Da    PI: 8.6268
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G325800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.4e-20175275198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f k+ltpsd++++g +++ +++a+e+      ++ ++ +++l+ +d  g +W++k+iyr++++r++lt+GW+ Fv +++L  gD +v    
  Brast01G325800.3.p 175 FSKILTPSDTSTHGGFSVLRRHANEClppldmSM-PTPTQELICKDILGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVYGDAFVYL-- 262
                         88****************************9644.445569********************************************9999.. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                         +++e+e +v+v+ 
  Brast01G325800.3.p 263 RTEEGEQRVGVRH 275
                         4578888999986 PP
2Auxin_resp851.5e-28301380181
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                         a+ha++tks+F v+Y+Pr+s+s+++v+v+k+  + k +++vG+Rfkm+fe+e+++ +++sGt+vg  +++p +W+ S+W+s
  Brast01G325800.3.p 301 ASHALQTKSIFLVYYRPRVSQSQYIVSVNKYFLTSKLRYTVGTRFKMSFEGEEVPVKKFSGTIVGDGAVSP-QWSCSEWKS 380
                         789********************************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-33168304IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-33171289IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-15173274No hitNo description
PfamPF023629.7E-18175275IPR003340B3 DNA binding domain
SMARTSM010197.9E-14175277IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588175277IPR003340B3 DNA binding domain
PfamPF065071.6E-24301380IPR010525Auxin response factor
PfamPF023093.6E-7633687IPR033389AUX/IAA domain
PROSITE profilePS5174523.291650730IPR000270PB1 domain
SuperFamilySSF542771.06E-9651723No hitNo description
Gene3DG3DSA:3.10.20.2407.1E-4652711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MMDRGEPTNK HTPPVTRANH QTTSLPRLAS SGRQAFASRP SSSLPKMTPP VTMPRGGGRD  60
AELFSELWRA CAGPLVELPQ PGQRVFYFLQ GHLEQVLGSV VQQSSEQKVL ADQIRMFQVP  120
YKILCRVVNV ELKAEVETEE VYAQITLLPE QDQEKLPTTP DPPLKEVRRP VVHSFSKILT  180
PSDTSTHGGF SVLRRHANEC LPPLDMSMPT PTQELICKDI LGSEWRFKHI YRGQPRRHLL  240
TTGWSTFVTS KKLVYGDAFV YLRTEEGEQR VGVRHHVQKR TAMPASVMSS QSMHFGVLAS  300
ASHALQTKSI FLVYYRPRVS QSQYIVSVNK YFLTSKLRYT VGTRFKMSFE GEEVPVKKFS  360
GTIVGDGAVS PQWSCSEWKS KKVQWDDPAN CTGPERVSPW EIEPADRPAS TVTVPSTRNK  420
RPRETTEDLD LQSLNPTTQK SWLSGMPRQH DKTVAGPSNP NRMIPGNQVI WPGERAGYGA  480
MGSSSFCQKP LVRESWLDEY NPSRQALSPT LSEISQKLYQ VTRNEGRASP WPVLPAYQAQ  540
QPALRLPCNS TALRNYQTEE AGPSLPPKVT EKSKEPGMVR LFGVNLMKPT SGTATAADNA  600
GAEAGETSAR VAGPNEESGQ VSAVSRVTKD HKVANESPRE IQSNQSCIAR NRVKVQMHGN  660
AVGRAVDLAN LDGYEQLIRE LEQMFDIKDI KQNFKVAFTD NDGDTMKVGD DPWMEFCQMV  720
KKIVIYPIEE EKTEPLQPPI SAAAAADATP ELDAKTES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1445640612356Auxin response factor 1
4ldw_A1e-1445640612356Auxin response factor 1
4ldw_B1e-1445640612356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G325800.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230667.10.0auxin response factor 1 isoform X1
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A2K2D7I10.0A0A2K2D7I1_BRADI; Auxin response factor
STRINGBRADI2G08120.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-174auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]