PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G338300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 261aa MW: 27376.8 Da PI: 9.9398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G338300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.7e-14	65	111	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr+++P K++Ka+ L +++ ++k+L Brast01G338300.1.p 65 RSHSEAERRRRERINSHLATLRSMVPCT-----DKMDKAALLAEVIAHVKKL 111 68***********************7.....6**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.796	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.03E-4	65	113	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.9E-14	65	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-11	65	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-14	66	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-12	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MNSGGLYDGF YGGFGHGGHG FSQLGASSSS ALLDGGAREL DAATDVPKRK GGEGEPEEKA 60 AMALRSHSEA ERRRRERINS HLATLRSMVP CTDKMDKAAL LAEVIAHVKK LKAHAARVGT 120 RCPVPSGADE VTVELLHHPS TPHAATTSSS NNSGGLLVKA TLSCADGCAD HFADVRRALR 180 PLAPRLLRSE VTTLGGRVRI SFLMAREGGV TADSVRRALG SVLDSGDRSA AAAFDFAPRD 240 SLLKSKRRRV SAFESCSSSS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	75	ERRRRE
2	245	249	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G338300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068593	2e-62	AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565499.1	1e-130	transcription factor bHLH30
TrEMBL	I1HDA8	1e-129	I1HDA8_BRADI; Uncharacterized protein
STRING	BRADI2G07050.1	1e-129	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11011	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	6e-21	basic helix-loop-helix 32

Link Out ? help Back to Top
Phytozome	Brast01G338300.1.p