PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G341900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 310aa MW: 33347.9 Da PI: 6.5883

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G341900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.5e-11	176	221	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ Brast01G341900.1.p 176 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVA 221 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-14	172	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.76	174	230	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-11	176	230	No hit	No description
Pfam	PF00170	4.5E-10	176	226	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-14	176	230	No hit	No description
CDD	cd14703	8.28E-24	177	227	No hit	No description
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAQLPPKIPT MAPAWPEFGG GHHHSRHHQR SPSMGAFLAA PLPPLPLPPP AAASGAAPQQ 60 QQQQQQPSWV DEFLDFSAAK RGAHRRTVSD SVAFLDDDNA GAGAHEFERL DDAQLMSMFS 120 DDLTPPPPQQ AAASASSPSD HNSNANDEKQ DNKGDAEEAQ SGCNGDGASA ATVDPKRVKR 180 ILANRQSAQR SRVRKLQYIS ELERSVTSLQ TEVSALSPRV AFLDHQRSLL TLGNSHLKQR 240 IAALAQDNIF KDAHQEALKK EIERLRQIYQ QQSPKNAESP TPDAPLQVRS DNGLIASEGT 300 AGPAPCLPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G341900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269\|PubMed:18065552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061266	1e-134	BT061266.1 Zea mays full-length cDNA clone ZM_BFb0128B20 mRNA, complete cds.
GenBank	KJ727557	1e-134	KJ727557.1 Zea mays clone pUT5417 bZIP transcription factor (bZIP117) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753813.1	1e-156	basic leucine zipper 2
Swissprot	Q5QNI5	1e-103	BZP02_ORYSJ; Basic leucine zipper 2
TrEMBL	A0A0Q3QP89	1e-155	A0A0Q3QP89_BRADI; Uncharacterized protein
STRING	Traes_2AS_6EA1E372F.1	1e-145	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-86	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast01G341900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]