PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G347700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 335aa    MW: 35455.6 Da    PI: 5.6116
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G347700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ +e  e++  C  ++  lC+ C    H        H++ p
  Brast01G347700.1.p  4 LCSACEAAEARVVCCADEAALCARCDRDVHAAnrlagkHRRLP 46
                        7******99*********************6577888888877 PP
2zf-B_box28.43.4e-095899237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        ++++C+ ++e ++ +fC +++ llC+ C ++ H        H
  Brast01G347700.1.p 58 SAPTCDICQEGHAYFFCVEDRALLCRGCDVAVHTAnafvsaH 99
                        6799******88*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.2E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.608147IPR000315B-box-type zinc finger
CDDcd000215.80E-7347No hitNo description
SMARTSM003361.6E-1357104IPR000315B-box-type zinc finger
PROSITE profilePS501199.45657104IPR000315B-box-type zinc finger
PfamPF006433.7E-75991IPR000315B-box-type zinc finger
CDDcd000211.31E-862104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MKVLCSACEA AEARVVCCAD EAALCARCDR DVHAANRLAG KHRRLPLLSP ALQQPSSSAP  60
TCDICQEGHA YFFCVEDRAL LCRGCDVAVH TANAFVSAHR RFLLTGVQVG LQPDDPEPEP  120
EAEPQPPPCK KRRSPTPPLY SDDDIGWAAG GITGALPDWS AVDEQFGSSP PLRTPAAEEP  180
AVNIKTPPKR SPRTALFGGS MPDWPLDEFF GFADFGSGFG FADNGTSKAD SGKLGSTDGS  240
PNHRSLSSSS SGAAGATQNA QEFFGQVPEV HWSSAPELPS PPTASGLRWQ GDPHYGDTAA  300
VFVPDICSPE NAFRCFPANN GPPPAASLKR RRRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G347700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559201e-124AK355920.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565203.10.0B-box zinc finger protein 22
TrEMBLI1HD341e-180I1HD34_BRADI; Uncharacterized protein
STRINGBRADI2G06370.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-34light-regulated zinc finger protein 1