PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G349800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 260aa    MW: 27193.9 Da    PI: 4.6139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G349800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1772122155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++aa+++ +g
  Brast01G349800.1.p  72 SSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDAAALCVKG 122
                         67*****998.**********843...6**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-2072131IPR016177DNA-binding domain
PfamPF008472.1E-1272122IPR001471AP2/ERF domain
SMARTSM003803.8E-3473136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3173131IPR001471AP2/ERF domain
PROSITE profilePS5103222.57673130IPR001471AP2/ERF domain
CDDcd000188.95E-2074132No hitNo description
PRINTSPR003673.4E-97485IPR001471AP2/ERF domain
PRINTSPR003673.4E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAASEQSSDS NSSTTTTTTT TSSSYSASSC SPRSAADADA DAAIGIQNTQ QSGDNNKRKR  60
ARVEASASAS ASSYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFPCPEMAA RAHDAAALCV  120
KGARAVLNFP DLAHALPRPA SLAPRDVQAA AARAALMAHH GRPAAAGHGG AIDDDDDEAP  180
LAGGGLSPEP ETKEGTQPMS EEAAEADQAQ ELVFDELAPL WVEDVVDFAP SDHCWTAAAY  240
DAALGGLDPV GFQPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1566130772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G349800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538527e-99DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850087e-99GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703067e-99HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233006.11e-93ethylene-responsive transcription factor ERF039
TrEMBLI1HD113e-92I1HD11_BRADI; Uncharacterized protein
STRINGBRADI2G06180.15e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-40ERF family protein