PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G352800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 477aa    MW: 50956 Da    PI: 8.5024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G352800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.7e-067294123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++Cgk F r  nL+ H r H
  Brast01G352800.1.p 72 YVCEICGKGFQRDQNLQLHRRGH 94
                        9********************88 PP
2zf-C2H211.90.0007149171123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  Cgk +  +s+ k H +++
  Brast01G352800.1.p 149 WRCDRCGKKYAVQSDWKAHSKVC 171
                         58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.97E-97194No hitNo description
PROSITE profilePS5015711.8017294IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-67294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00697294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM0035541114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4137169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.97E-9144169No hitNo description
SMARTSM00355180149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLVKDLATIQ QQQLAAEENM SNLTSASGDQ TSVSSHPLPP PSKKKRSLPG NPDPEAEVIA  60
LSPRALMATN RYVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRNPNEAVR KKVYVCPEPG  120
CVHHEPARAL GDLTGIKKHF SRKHGEKRWR CDRCGKKYAV QSDWKAHSKV CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESARAVAA VEGQQELQGM LFSHAGGDEA GFQMPVPLDA  240
SAQQQQQHLQ GNQLIQELCL KRENHHHQQQ QQQQFAPSSW LSEQQQQQLE MAAGEGTMFV  300
IGTSSTPAES SSTQQPPGSS GTGSFAFSSP APAHMSATAL LQKAAQMGAT LSRPSSCQGQ  360
MAAATLSSTN APVPEAVATT SNNANVTTAI GAGFGAPLPR TNSRAAGNAA AGGGNEGLTR  420
DFLGLRAFSH GDMLGMAGFD PCGMPMPTSA SASATAAVYN QQGGGHHQSS SKPWHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32145206364Zinc finger protein JACKDAW
5b3h_F3e-32145206364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198111KLKQRNPNEAVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G352800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565455.10.0protein indeterminate-domain 11
TrEMBLA0A0Q3QNV80.0A0A0Q3QNV8_BRADI; Uncharacterized protein
STRINGBRADI2G05900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-100indeterminate(ID)-domain 7