PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G354200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 227aa MW: 23880.2 Da PI: 9.6007

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G354200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.2e-37	33	88	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s++tkfCyynny+l+qPr+fCk+CrryWt GGalrnvPvGg++r++ Brast01G354200.1.p 33 ERLACPRCESRDTKFCYYNNYNLQQPRHFCKGCRRYWTVGGALRNVPVGGATRNKA 88 6789*************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.8E-31	34	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.82	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-21	37	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVLITAMDHR LAEEADGGLA TRTSAAAGRP AAERLACPRC ESRDTKFCYY NNYNLQQPRH 60 FCKGCRRYWT VGGALRNVPV GGATRNKAAL QPSARRKRSS SSSHHGFSAA MASPPVPAPA 120 PARPLSFIQA AATMQSYEVS FVPAGLQVSM SMVDPDRRLL DLGGSFSSLL APPPQPLHFG 180 GFLLGGGGSG SAGLAQAPAA LQQQPAPVSQ ALTEGFWGMD WPDLSI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G354200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002537	1e-57	AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06.
GenBank	AP002746	1e-57	AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBank	AP014957	1e-57	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-57	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753871.1	3e-75	dof zinc finger protein DOF3.1
TrEMBL	A0A0Q3QNU6	7e-74	A0A0Q3QNU6_BRADI; Uncharacterized protein
STRING	OMERI01G06200.1	7e-46	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-28	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Brast01G354200.1.p