PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G354700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 229aa    MW: 24693.8 Da    PI: 8.4768
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G354700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd++l d+++++G+g +W t +++ g++R++k+c++rw++yl
  Brast01G354700.1.p 14 RGPWSPEEDDKLRDYIQRHGTGgSWITFPKKAGLRRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding445e-1469111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eEd l+  +  +lG++ W++Ia+ +  +Rt++++k++w++
  Brast01G354700.1.p  69 GGFTEEEDALIFSLYSKLGSK-WSLIASQLE-RRTDNDVKNHWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.128962IPR017930Myb domain
SuperFamilySSF466893.11E-2712109IPR009057Homeodomain-like
SMARTSM007171.2E-91364IPR001005SANT/Myb domain
PfamPF002495.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231569IPR009057Homeodomain-like
CDDcd001674.49E-81662No hitNo description
PROSITE profilePS5129423.11963117IPR017930Myb domain
SMARTSM007172.3E-1267115IPR001005SANT/Myb domain
PfamPF002491.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2270117IPR009057Homeodomain-like
CDDcd001677.45E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRAPCCDRA AVKRGPWSPE EDDKLRDYIQ RHGTGGSWIT FPKKAGLRRC GKSCRLRWLN  60
YLRPDIRHGG FTEEEDALIF SLYSKLGSKW SLIASQLERR TDNDVKNHWN TKLKKRLAAF  120
SSPSSSSFLP AAAPMATHAH PLVLAVPAVK AETYTYDDFM APPAGAGALH HVDHPFGGGA  180
TTSASNWSAA ADSAAGADGF FADFCAGGAA DQFLGGFYYP LDPTLSLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G354700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519081e-143JF951908.1 Triticum aestivum clone TaMYB25 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564735.11e-119transcription factor RAX1
SwissprotQ9SJL75e-67RAX2_ARATH; Transcription factor RAX2
TrEMBLI1HCW41e-118I1HCW4_BRADI; Uncharacterized protein
STRINGBRADI2G05740.11e-119(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-66MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]