PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G356300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 360aa    MW: 38096.7 Da    PI: 8.6045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G356300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.6e-13107151347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  Brast01G356300.1.p 107 PWTEEEHRMFLMGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 151
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565319IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.558100156IPR017930Myb domain
SuperFamilySSF466891.35E-16102156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-18103155IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-11104150IPR009057Homeodomain-like
SMARTSM007176.9E-11104154IPR001005SANT/Myb domain
CDDcd001674.92E-9107152No hitNo description
PfamPF002491.4E-10107151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNARTCPA RGGGGVRLFG VHLTSPPVAS MKKSASMSCI ASSLGGGSGG  60
SSPAAGAGGG GGGARGGGEG APGYVSDDPM HASCSTNGRA ERKKGTPWTE EEHRMFLMGL  120
QKLGKGDWRG ISRSFVVSRT PTQVASHAQK YFIRQTNSSR RKRRSSLFDM VPEMPMDESP  180
TGTEEFMVCS TQDESSSSNK LSLFYLGQHK EAEFDKDVPT LHLRQHKESE FAEPSLEAPD  240
LEMNHAASFK AAAVPTMPSF YPVPLTLWPQ NVANVEVAGT AHEILKPTPV NGKEAIKGDE  300
VVSMSKLSIG DGSSGPLEPS ALSLQLTGST NTRQSAFHVN PPMTRTDLSK GNNSPIHAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G356300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716730.0AK371673.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2139L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564624.10.0transcription factor MYBS3
TrEMBLI1HCT90.0I1HCT9_BRADI; Uncharacterized protein
STRINGBRADI2G05590.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-73MYB_related family protein