PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G357300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 230aa    MW: 24645.6 Da    PI: 7.2467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G357300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.8e-28165223159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYG+K vk+s++ r+YYrC+ +gC vkk+ver+++dp +v++tY+g H h+
  Brast01G357300.1.p 165 MEDGFRWRKYGKKAVKSSPNLRNYYRCSAPGCGVKKRVERDRHDPAYVITTYHGVHSHP 223
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30150225IPR003657WRKY domain
SuperFamilySSF1182903.92E-26157225IPR003657WRKY domain
PROSITE profilePS5081128.92160225IPR003657WRKY domain
SMARTSM007744.5E-32165224IPR003657WRKY domain
PfamPF031062.8E-22166223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAASLGRLGR EEACYSHSSS SAPLQYSFPP LMAAGDNNDL CPPDAAAAAM PVVFPELGLA  60
GIIQPSPDQQ HYSLPLPPET FPGCGGGVAE GDHNLDGMVV MDIMHGMSSS NGSSGFPFPA  120
ATPCPWRCYH QCCGGSSSNK GDGEKEEQER SHRIGFRTRS SVEVMEDGFR WRKYGKKAVK  180
SSPNLRNYYR CSAPGCGVKK RVERDRHDPA YVITTYHGVH SHPTPAGTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23155226778Probable WRKY transcription factor 4
2lex_A1e-23155226778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G357300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615124e-60AK361512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565444.11e-70probable WRKY transcription factor 50
TrEMBLI1HCT03e-69I1HCT0_BRADI; Uncharacterized protein
STRINGBRADI2G05510.14e-70(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4999622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-37WRKY DNA-binding protein 51