PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G357400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 533aa    MW: 55153 Da    PI: 8.8724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G357400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29257316159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +v+++tYeg H h+
  Brast01G357400.1.p 257 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSVLITTYEGAHSHP 316
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-31242318IPR003657WRKY domain
SuperFamilySSF1182901.22E-26250318IPR003657WRKY domain
PROSITE profilePS5081127.795252318IPR003657WRKY domain
SMARTSM007742.4E-35257317IPR003657WRKY domain
PfamPF031068.8E-26258316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDVAVERPLP SPPPVKEEKK AGSMERGSAT PIVFESFPTC RQRDSISNKV QQEEEEGDKT  60
KLEATKAEMG SVREENERLK TLLSHVVRDY QSLHTHFLHA VKRPKSPQPQ PAAAAMDNLL  120
QLPAAPAPPT TAAAEDLVSL SLGRGRPDAG GAGRIKGAAH HERSSSSSSG TDTDRDDRLS  180
LGLSSRRSSD DDDKKATLLN LSSGSSAAAA ACPPAAMSKA RKSPGGAGDG GADDEVLQQQ  240
AKKARVSVRV KCDTPTMNDG CQWRKYGQKI SKGNPCPRAY YRCTVAPSCP VRKQVQRCAD  300
DMSVLITTYE GAHSHPLPPA AAAMASTTSA AASMLLAGPS TSSSSAAHLL GPFGSSAAHH  360
AALLGPAATT ISTVASCPTV TLDLTAPPHS SLMPHHASPS PSPYAAAYES SKAMLPAAWS  420
SGAGYLQAAY GGSYYGKSNS ISAMSMLPAA TAMQQFGMGM ARPVAAEQIL YQLPAYLQRT  480
ASGGGAQQGP APAVTDTIAK AITADPSFQS VLAAAITSYM GRGAGAAPQQ HK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20248318877Probable WRKY transcription factor 4
2ayd_A1e-20244320176WRKY transcription factor 1
2lex_A1e-20248318877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241250KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G357400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680421e-135AK368042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565443.10.0probable WRKY transcription factor 72
TrEMBLI1HCS90.0I1HCS9_BRADI; Uncharacterized protein
STRINGBRADI2G05500.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.16e-43WRKY DNA-binding protein 72