PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G359400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YC
Protein Properties Length: 213aa    MW: 22767 Da    PI: 4.1698
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G359400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC53.26.6e-17811739100
               NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivpr 98 
                         + e++ ++  + lPl+r+kki+++d ++++++aea  l++ a elf+  l+  +   a +  rr+++ + i aa  ++  + dfl+d  p 
  Brast01G359400.1.p  81 EAEEEVEVLSTVLPLSRVKKIIRVDREIRKVTAEASLLIAAATELFLGSLAAGAHAAAAQRGRRAVRAAHIRAAArAHRPTADFLLDCLPA 171
                         56788889999************************************************************98762566799*****9997 PP

               NF-YC  99 de 100
                          e
  Brast01G359400.1.p 172 AE 173
                         65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.37E-1481171IPR009072Histone-fold
PfamPF008085.0E-1393154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-1793170IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MATVAAVDEH TEAMEEVEGE ERAAAEPTEA MEQVEEEERV EVEAGDPAEE DQEEEEAGAE  60
PQMEAAEQDE EEEERAEDHA EAEEEVEVLS TVLPLSRVKK IIRVDREIRK VTAEASLLIA  120
AATELFLGSL AAGAHAAAAQ RGRRAVRAAH IRAAARAHRP TADFLLDCLP AAEEAPRARS  180
GSDGGAAAAV EAAPKPLPRG TRRIDGFFQK VT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G359400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-105HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565438.11e-53uncharacterized protein LOC100830304
RefseqXP_014753807.11e-53uncharacterized protein LOC100830304
TrEMBLA0A3B6EFW62e-57A0A3B6EFW6_WHEAT; Uncharacterized protein
TrEMBLA0A446N6Y22e-57A0A446N6Y2_TRITD; Uncharacterized protein
STRINGBRADI2G05280.15e-53(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.16e-12nuclear factor Y, subunit C13