PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G366600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 176aa    MW: 19444 Da    PI: 8.5905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G366600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.2e-105984126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+ C ++  tG C +G+ C FaHg
  Brast01G366600.1.p 59 YKTKVCVNYETTGRCMFGEYCAFAHG 84
                        9************************9 PP
2zf-CCCH21.15.6e-0798119425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           C++f+ tGtC yGdrC F+H
  Brast01G366600.1.p  98 QVCHNFMYTGTCYYGDRCIFSH 119
                         57******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.72E-105789IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-155791IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-65885IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6015886IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-65984IPR000571Zinc finger, CCCH-type
SMARTSM003560.04394121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.20694122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-795120IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-597119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-598120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERGQRETTP NKADHVTVVQ PGERPPQRPP PPPRSSEGIV VAGGPRQWVG PPPPARLFYK  60
TKVCVNYETT GRCMFGEYCA FAHGVAELRR PDVDMGHQVC HNFMYTGTCY YGDRCIFSHA  120
LSAPGPGLAI PGRAFPPVHQ MPDQEQEAGA SRVSNLERLS RKKTRGIYGD WPEQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G366600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313999.17e-64zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A0Q3QNA42e-62A0A0Q3QNA4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-10C3H family protein