PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G366700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 209aa    MW: 23309.4 Da    PI: 8.1301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G366700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.84.8e-106388126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lCr f  +G C yG+ C+FaHg
  Brast01G366700.1.p 63 YKTRLCRKFDVSGRCMYGGLCTFAHG 88
                        9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-145795IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-96193IPR000571Zinc finger, CCCH-type
SMARTSM003560.00166289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8356290IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-76388IPR000571Zinc finger, CCCH-type
SMARTSM003560.01295122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5495123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-699122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-599124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDRERNPAWE TTPEDIIVVK PGGRPRQLPP SEEIVLVGSP QRQPQPQHLL LDDDQLPPEE  60
RYYKTRLCRK FDVSGRCMYG GLCTFAHGSA ELRAPTLQEA CFHFRSTGAC HYGENCAFSH  120
ASAEPGLAIR NLEEPKLVEA RRSEAPSARN EIPAAPRRAF FLPMPAPAVR ERPRQMSEGQ  180
EGTAGAKISN LERLSRKKTS GIYGDWPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G366700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313999.12e-42zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A0Q3JWX15e-45A0A0Q3JWX1_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-09C3H family protein