PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G366800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 225aa    MW: 24324.4 Da    PI: 9.0579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G366800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-075176126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ykt+lC+ f  tG C y + C+FaHg
  Brast01G366800.1.p 51 YKTKLCDKFETTGLCMYAEGCTFAHG 76
                        9************************8 PP
2zf-CCCH18.73.1e-06110131425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         + C++f+  G+C+yG++C F H
  Brast01G366800.1.p 110 RVCHNFRDRGICHYGEKCVFPH 131
                         68****************9966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-144683IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-94981IPR000571Zinc finger, CCCH-type
SMARTSM003560.00535077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3895078IPR000571Zinc finger, CCCH-type
SMARTSM003560.76106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.263106134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4110132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5110133IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDREIRRWDS TPEDVIVLQT GGGPQRPQPS AGIVQPQQCP PDLPPPEKLY YKTKLCDKFE  60
TTGLCMYAEG CTFAHGHADL RRPTHAYAYA DPRRPPPAAA HGAGAAGGGR VCHNFRDRGI  120
CHYGEKCVFP HTSAPAGREI RNPAGEPKRV EGARRSEAPP AARASATAPR YGSAPGRAFP  180
PVPAPAVPRQ MPEQQQQGAP EVSILTLLSQ RKTRGIYGDW PDHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G366800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232991.11e-97zinc finger CCCH domain-containing protein 1
TrEMBLA0A0Q3MEW22e-96A0A0Q3MEW2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-07C3H family protein