PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G375800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 261aa    MW: 27598.3 Da    PI: 8.7601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G375800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64.1e-1272117554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+e+ErrRR+riN  ++ Lr+++P a    +k ++Ka+ L ++v+ +k+L
  Brast01G375800.1.p  72 HSEAERRRRERINAHLAALRRMVPDA----AKQMDKATLLARVVDQVKDL 117
                         9************************8....688************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1358124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.88867117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1471126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1072117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1073123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.2E-4159224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAAACRSLRQ EGKGELQPYE GCVDPLAASR GGPAVLLPRQ ASSAPPPEMS SSSGSGSGTG  60
RSSTEARALK IHSEAERRRR ERINAHLAAL RRMVPDAAKQ MDKATLLARV VDQVKDLKKR  120
ASEASAIHPT PAQTDEVSVE CCTGDNDNDH SSLYYMKASV SCDDRPGLAA GLIGALHGLR  180
LRPVRAEVTS LGGRVQHVLT LCNEEGSGDC AGLRSLKEAV RQALAKVATP ELLCGSNNAS  240
VPFQSKRQRI LESGYSVMSI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G375800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565367.11e-136transcription factor bHLH51
TrEMBLI1HC881e-135I1HC88_BRADI; Uncharacterized protein
STRINGBRADI2G03830.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-21bHLH family protein