PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G380100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 360aa    MW: 39478.1 Da    PI: 8.5461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G380100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.83e-55181481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lppGfrFhPtdeel+ +yL++kv+++++ + ++i +vd++k+ePw+Lp+  k++a  + kewyf+++rd+ky+tg+r+nrat++gyWkatg
  Brast01G380100.1.p  18 LPPGFRFHPTDEELIIFYLNPKVSNRSFCT-RAIGDVDMNKCEPWELPAkaKMTAgnDMKEWYFYCHRDRKYPTGHRTNRATQAGYWKATG 107
                         79*************************988.89**************9535333333666******************************* PP

                 NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         kdke+++  + l+g+kktLvfykgrap+gekt+Wvmheyr+
  Brast01G380100.1.p 108 KDKEIFRPPSVLIGMKKTLVFYKGRAPRGEKTNWVMHEYRM 148
                         ***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-619187IPR003441NAC domain
PROSITE profilePS5100558.03618187IPR003441NAC domain
PfamPF023652.9E-2819148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGDMQQQQQH LQQGQLDLPP GFRFHPTDEE LIIFYLNPKV SNRSFCTRAI GDVDMNKCEP  60
WELPAKAKMT AGNDMKEWYF YCHRDRKYPT GHRTNRATQA GYWKATGKDK EIFRPPSVLI  120
GMKKTLVFYK GRAPRGEKTN WVMHEYRMES SSNNNNENKV LSFLPTAKVT NPSSLKDEWV  180
VCRIFHKTTG IKKLVVPSYP MGPVAMGDQQ QGFGSSTAAC IQTQLQPPPM AMGCMDPSAL  240
YGTTGAGASS SYQLPPPMAM AMGNAPEPAP ALPMNGLFFG TQLQAPQPPA PMSFYQQHMQ  300
LQMGHAGDQG FIASGPSSMV SQSQDDAAGV SNAAAATEIS SVEMAGGIDG LGMWKFPKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-501519314171NO APICAL MERISTEM PROTEIN
1ut4_B8e-501519314171NO APICAL MERISTEM PROTEIN
1ut7_A8e-501519314171NO APICAL MERISTEM PROTEIN
1ut7_B8e-501519314171NO APICAL MERISTEM PROTEIN
4dul_A8e-501519314171NAC domain-containing protein 19
4dul_B8e-501519314171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G380100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565350.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLR34e-76NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0Q3FU070.0A0A0Q3FU07_BRADI; Uncharacterized protein
STRINGTraes_7AL_38B48B7B2.21e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.21e-74NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]