PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G380300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 413aa    MW: 44209.9 Da    PI: 7.1949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G380300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000273023401255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  Brast01G380300.1.p 302 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYINFLQ 340
                         7788899*********998.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.268290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-5300344No hitNo description
SuperFamilySSF474599.95E-11300352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-8304347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MMASSSSSSD LSAADHHHLI LQGDLPWRPP SSLPLAPALQ HAIGGTHQWN QPLILDQLSP  60
DELELLLQSA QAQLHHNHSH SHLLAAATPL TAAVAPHQLS SLLMMQELGF QWSSAVTETT  120
ADMSSSSQQH QDAVLKDDEE APKLAGAGSL INSCRHRSSP MTVDYNDIVV DHGGSGAVVL  180
PSVNVSLMQK QCPVVGGEAF EMLCKSGRLA IMPTSGTPLL GSEHVAYDYG PPAHHHRLLQ  240
GPSSSYKMGT VSAALLSGNG NVSSCHDEQQ LQLAAAVSSI SSKKKSTRLR PSTSIIPSFK  300
VRKEKLGDRI AALQQLVSPF GKTDTASVLM EAIGYINFLQ DQVETLSCPY MKSSKHKKAR  360
TTQQRGPSNT GDQKEEAKLD LRSRGLCLVP LSCTSYVTNE NGIWAPSNFR GN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G380300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-48HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314930.10.0transcription factor bHLH110 isoform X1
TrEMBLI1HC340.0I1HC34_BRADI; Uncharacterized protein
STRINGBRADI2G03427.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-41bHLH family protein