PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G387300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 303aa    MW: 33082.1 Da    PI: 8.8816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G387300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.9e-15148192347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Brast01G387300.1.p 148 PWTEDEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 192
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.2732881IPR017884SANT domain
SMARTSM007170.0672979IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-63384IPR009057Homeodomain-like
PROSITE profilePS5129418.929141197IPR017930Myb domain
SuperFamilySSF466892.54E-17142197IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-17144195IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-11145191IPR009057Homeodomain-like
SMARTSM007171.4E-12145195IPR001005SANT/Myb domain
PfamPF002493.4E-12148192IPR001005SANT/Myb domain
CDDcd001673.10E-11148193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMRESWMEVL PAMDHYAAAA ASRGWFMAPP QAWTAQENKQ FERALAALDL RCPDWDRVAR  60
DTGKTVVEVM THFKDLELDV RQIESGLVPF PVYGHGAGGH GSAAFTLQWD GHGGAGEFRH  120
GGYRFGGGCG AKRHAGRTPE QERKKGVPWT EDEHKLFLLG LKKYGKGDWR NISRNFVQTR  180
TPTQVASHAQ KYFIRLSSGG GKDKRRSSIH DITTVHLTDD RPPSPSQSSL ITSNQSNTPS  240
TPSVTVGQFS LPGDAKQHGG APNAAFDSPC SGMPPYGVSL QDQGLQCGPL HDQLAPNRSM  300
LY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G387300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568449.10.0transcription factor DIVARICATA
SwissprotQ8S9H74e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLI1HBW40.0I1HBW4_BRADI; Uncharacterized protein
STRINGBRADI2G02810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-46Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]