PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G409600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 197aa MW: 20989.7 Da PI: 10.2753

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G409600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	24	87	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as..........kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+ +s + +sk + + L A YI++L+ Brast01G409600.1.p 24 ERKDVEKNRRLHMKGLCLKLSSLVPHhQStsfnsssppaSSSSKDaATQLDQLDSAAAYIRQLK 87 56889*******************666*****84444446**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.432	20	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-9	22	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-11	22	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-4	24	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-4	26	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MKSRRQQMSD ATSSGGGGCS NKMERKDVEK NRRLHMKGLC LKLSSLVPHH QSTSFNSSSP 60 PASSSSKDAA TQLDQLDSAA AYIRQLKGRI DELRRRKQSR RPGNGVSSSG DGVGMLPVVE 120 VRQQQESAAV DVALVSEAGK PFKLHEVIAA LEEEGAEVVS ASFSAVADKI FYTLHSRAPP 180 LDAAALAHRL RALAAP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G409600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564810.1	9e-87	transcription factor bHLH168
TrEMBL	I1HB73	2e-85	I1HB73_BRADI; Uncharacterized protein
STRING	BRADI2G00740.1	3e-86	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	6e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast01G409600.1.p