PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G413800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 199aa    MW: 22066.8 Da    PI: 8.4991
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G413800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-162266147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r rW+++E+e+++da  ++G + Wk+I +++  ++t  q++s+ qky
  Brast01G413800.1.p 22 RERWSPDEHERFLDAMLRFGRD-WKKIEEHVR-TKTTVQIRSHAQKY 66
                        78******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.49E-171672IPR009057Homeodomain-like
PROSITE profilePS5129417.5241771IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-91972IPR009057Homeodomain-like
SMARTSM007177.6E-102169IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.7E-172169IPR006447Myb domain, plants
PfamPF002492.3E-132266IPR001005SANT/Myb domain
CDDcd001679.27E-92467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEQTPPGPGK KARKPYTISR PRERWSPDEH ERFLDAMLRF GRDWKKIEEH VRTKTTVQIR  60
SHAQKYFLKV QKLXLAAGLH PIRRLGVTQP QTQGAMMVLH DQPQECPPGA LLQSSIGSSS  120
SSSSLGAPPS CGNTSMDWAS TGSASDAEDD TIPLPLSPDD THFAQVYRFV GDVFDPTTPC  180
QIEAHLQRLK GMDAITVKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G413800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227459.11e-111protein REVEILLE 5 isoform X1
TrEMBLA0A0Q3H4R91e-110A0A0Q3H4R9_BRADI; Uncharacterized protein
STRINGBRADI1G34840.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-33MYB_related family protein