PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G009100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 415aa MW: 44756.1 Da PI: 4.5425

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G009100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.2	3.5e-15	13	162	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk.sgyWk.atgkd 89 p+ ++FhPtd ++v +yL + + g +++ +vi d ++ P++L k+ ++++++ +f ++ k+++g r+ ra++ g W+ ++g Brast02G009100.1.p 13 PAALKFHPTDAQIVAQYLVPLALGLPNPNPRVILIDDPASLPPKELLvKHGHGGSHHAFFLCPPTDKSRNGGRRDRAIRgGGSWSgEKGVV 103 6789********************9999999999******834444566688***************77648899656665 PP NAM 90 kevlsk......kgelvglkk.tLvfy..............kgrapkgektdWvmheyrl 128 k+++ ++ +v kk L++ k + k+ + Wvmhe++l Brast02G009100.1.p 104 KQLILLrdggggGELHVEYKKyNLTYRvdgdddddgggkkgK-GKGKAPAAGWVMHEFQL 162 554443477765333355555167777888888877554221.223334799******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-21	10	178	IPR003441	NAC domain
PROSITE profile	PS51005	18.786	12	179	IPR003441	NAC domain
Pfam	PF02365	1.6E-9	14	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEASRFGFDP GTPAALKFHP TDAQIVAQYL VPLALGLPNP NPRVILIDDP ASLPPKELLV 60 KHGHGGSHHA FFLCPPTDKS RNGGRRDRAI RGGGSWSGEK GVVKQLILLR DGGGGGELHV 120 EYKKYNLTYR VDGDDDDDGG GKKGKGKGKA PAAGWVMHEF QLVHPASLSG AVISRIKLTD 180 RKLKEEENLM NEQSVQDQHD DYQMSPSYQM GYPPDQLYQV GEPGPGCQIE YQPGLSYQMG 240 EPGPSYQMGE PGPSCQMGYQ PGSSYQMGEP GPSYHMGELG PSYQMGYQPG SNYQMGELGP 300 TDANYYCVDG NGTNNYYYYD NGGVGQSTTT GHHAPCYVDD DDDDAVGGMG SSYYYDDNSC 360 YAGEGVAVVD DDGVISNENT ITSLHDHIHG FSIQGQDPEG STLTDSFPKT RQAE*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEASRFGFDP GTPAALKFHP TDAQIVAQYL VPLALGLPNP NPRVILIDDP ASLPPKELLV  60
KHGHGGSHHA FFLCPPTDKS RNGGRRDRAI RGGGSWSGEK GVVKQLILLR DGGGGGELHV  120
EYKKYNLTYR VDGDDDDDGG GKKGKGKGKA PAAGWVMHEF QLVHPASLSG AVISRIKLTD  180
RKLKEEENLM NEQSVQDQHD DYQMSPSYQM GYPPDQLYQV GEPGPGCQIE YQPGLSYQMG  240
EPGPSYQMGE PGPSCQMGYQ PGSSYQMGEP GPSYHMGELG PSYQMGYQPG SNYQMGELGP  300
TDANYYCVDG NGTNNYYYYD NGGVGQSTTT GHHAPCYVDD DDDDAVGGMG SSYYYDDNSC  360
YAGEGVAVVD DDGVISNENT ITSLHDHIHG FSIQGQDPEG STLTDSFPKT RQAE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G009100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14301	19	26

Link Out ? help Back to Top
Phytozome	Brast02G009100.1.p