PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G011700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 1982aa    MW: 217835 Da    PI: 5.487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G011700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-0619571977526
                          --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                          +C+ f+++G+C+ G++C++ H+
  Brast02G011700.1.p 1957 ICK-FHQSGYCRKGSSCNYLHP 1977
                          799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.105.1E-8114186IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579036.2E-8125178IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002492.2E-6133179IPR001965Zinc finger, PHD-type
CDDcd155687.75E-20133178No hitNo description
PROSITE patternPS013590134194IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0023358443IPR019835SWIB domain
SuperFamilySSF475928.5E-20361439IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.109.1E-24362442IPR003121SWIB/MDM2 domain
PfamPF022012.6E-14365438IPR003121SWIB/MDM2 domain
SMARTSM007191.4E-40498607IPR004343Plus-3 domain
PROSITE profilePS5136027.032498630IPR004343Plus-3 domain
SuperFamilySSF1590421.57E-32499625IPR004343Plus-3 domain
PfamPF031261.2E-22503605IPR004343Plus-3 domain
SuperFamilySSF552773.27E-14787848IPR003169GYF domain
PROSITE profilePS5082913.473795847IPR003169GYF domain
SMARTSM004444.0E-12796849IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.6E-13797848IPR003169GYF domain
PfamPF022133.7E-8798837IPR003169GYF domain
PROSITE profilePS5010315.36619521979IPR000571Zinc finger, CCCH-type
SMARTSM003560.001119541978IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-519541977IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-419571977IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1982 aa     Download sequence    Send to blast
MEEAPARLAG ADDDDGPVVG VGMGMDDSQF LGSMMGYTVL AQPALAPATA PAPDHHHHQQ  60
QQLKVELEEE ALVGVKRRRG RPPKARAGGT APALAEAAVL VPAAAVSVSA AATAKKAAAK  120
AARKRAEDEE EVVCFICFDG GDLVVCDRRG CPKVYHPACI KRDEAFFQSR SKWNCGWHIC  180
SSCEKPVHYM CYTCTFSVCK VCIKQGKFFG VRGTKGFCDT CFGTIFLIES KDDDDTKVRV  240
DFDDPNSWEY LFKLYWLDLK GKLSLTMEEL TGAKSRWNVP ITYARKEKDE SSDDLYDANN  300
DDGGGSRKRR CANSSRIRGR KRRKAHSDRT IAVQNVEIPT GDAGILPKKE PSEGVLLPPD  360
TKWASPELLE FVGYMRDGDR SFISQFDVQA LLLDYIKKND LRDPRRKSQI ICDSRLHCLF  420
RKTHVAHFEM LRLLEMHFLV SDASAVNNGS HVDIKPNSAQ INASGYREMT EKLSPQRKKR  480
MHGKMEREPL ANLNDYAAVD MHNMNLIYLR RSLMEDLIDD SAFPAKISGG FVRIKISGLG  540
QKQDMYRLVK VIGTHKVSEK YSTGKKTTNF ALEILNLNKK EIITMDTISN QDFTEEECER  600
LRQCMKCGLI SRLKVGDVQE KAVIFQSVRV NDWLDNEKQR LGYLRDRASE TGRRKDLREC  660
VEKLQLLNSS EERARRINEV LEVHVDPHMD PDYESTEEVD YQKAVVRIVN GKKSDGLFSP  720
INMQNHAQKI PDAIRHPRNL SKQSTICKLA AGKNSRNFHS AVGTGTPKSG TCISTKISEA  780
ASPSRVTLSS DMEPEKVWHY KDPLGNVQGP FTLLQLSKWT TYFPCDLRVW LIFESEERSL  840
LLTEVLSKQP KDFVQAATVP SSKTLACSGQ NRKGPNVDMN SALSPLGYST LNSSEMMVQS  900
AKCTVPERWG VNSLDDRFSV SGSSIPPKDA STTTIGVQYQ KKNSCFVPSP RSPYEQSNPH  960
HEGVQVRCSG EWNNGHNRDG LWSPTMTQTS CSGHGNVESH HNQHDSKSGL KAGSAKDLES  1020
RQDYSHTVPT QLTRRDVSSP VLASSPSESR TASSQYESSC FSSTTNPSVH DELHSSITSE  1080
KASNCAPVTF VEDRGSSSPS GMLSHSERVP ICGTQSVPSK SISEMCKVGE SKHLKKTLEA  1140
DVSNASVNQS PQSKMFPDSS PDDQDTERKC PSPTPRSESK EPAVDHSGPT PVAHETLDIN  1200
KIPDCSPVAY IPLKFEPPAT DVGPTEREYP SPTTRSESKE LAMDHPGSTS VAPEILDVKR  1260
PDYSPVVNIS LKADPPATEV GAREMGATGS IPDLEKTDLR GEDFNIQKEF CSKSTLVTSE  1320
KMVVGPAYCA EPIDVSDVSE SVSNLEKTDL RGKDSEDLNI QKELYSESIL VRSEKMMVKP  1380
ASGAEPIDVA NLLESVSNLE KTDLRGEVSN VQKELVRNEK MVAEPASCAE PIDVSGALEP  1440
VFSLEKTDLK HDDSNIQKEL HTEPVIVTRE NMVVDPASCA RSIHETDVLE SASNLEKTDL  1500
KGEDSNIQKE LQAESIIVTR ENVGVDPASC AESIHASDVL ESVYNLEKTD LKGEDSNIQK  1560
EMFRQSTLDV SEKMVVDPAS CASIDVSDVL ESVFNLERTD LKGEGSCIQK DIVIDPASCP  1620
ESIHVSDVLE SVSKETDFKS ENLNIQRDLH EVSTLVTREN MAVDLASCAQ SIDVPDVLGS  1680
LVQQSCGTTY MDAIAAIEDF MTTSPEEPQC SSPIALSPWG EPGYYQGDAV DSTLWDVQDY  1740
PMNDVWSLLP PTPTIEHVSG DKNDGGVARV TETVTVIQGD DEPFQRGLTP GEENVELANA  1800
GASTAWGLNE KVRSKSTAVS VPSIDGSTGL FGWKPSATDS ESTNTCIAWT TSQNLNSSSS  1860
YATAAASVKT SQEASRKQEC PDLNVANLGE ALGNTKSLNP STGNANRGSQ RNHHRDRYSE  1920
ISESWLLSSN YSRSRSDGFR GGATSRASPR GQTQRGICKF HQSGYCRKGS SCNYLHPSPQ  1980
Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307323KRRCANSSRIRGRKRRK
2318324GRKRRKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G011700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229318.10.0uncharacterized protein LOC100826729
TrEMBLA0A0Q3P1Z10.0A0A0Q3P1Z1_BRADI; Uncharacterized protein
STRINGBRADI1G77760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-175nucleic acid binding;zinc ion binding;DNA binding