PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G012400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 711aa    MW: 75907.6 Da    PI: 8.7681
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G012400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix941.4e-2976160187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+++e+laL+++r++m+ ++r+++lk+plWe+vs+++ e g++rs+k+C+ek+en+ k+y+++k+g+ +r   + +t+++f++lea
  Brast02G012400.1.p  76 RWPREETLALLKIRSDMDAAFREAALKGPLWEQVSRRIGEMGYKRSAKKCREKFENVDKYYRRTKDGRAGR--AHGKTYRFFSELEA 160
                         8********************************************************************98..56667******985 PP
2trihelix98.46.2e-31406497186
            trihelix   1 rWtkqevlaLiearremeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                         rW+k ev+aLie+r+eme r++     ++  k+plWe++++ mr+ g+ rs+k+Ckekwen+nk++kk+ke+++++ ++ +s+tcpyf+ql
  Brast02G012400.1.p 406 RWPKAEVHALIELRTEMEARYGgggghEAPNKGPLWEDIAAGMRRLGYARSSKRCKEKWENINKYFKKVKESSRSKqRPVDSKTCPYFHQL 496
                         8*********************44443456********************************************9956999********** PP

            trihelix  86 e 86 
                         +
  Brast02G012400.1.p 497 D 497
                         8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001373135IPR001005SANT/Myb domain
CDDcd122031.19E-2475140No hitNo description
PROSITE profilePS500906.80675133IPR017877Myb-like domain
PfamPF138371.6E-1975161No hitNo description
PROSITE profilePS500907.05399468IPR017877Myb-like domain
SMARTSM007170.037403470IPR001005SANT/Myb domain
CDDcd122031.83E-26405475No hitNo description
PfamPF138378.2E-21405499No hitNo description
Gene3DG3DSA:1.10.10.609.0E-4405467IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MQQQQQPTAE MPPFSPAGWA PAPISSRPPA PAPGQQQQQQ TVAGAEELGG AAASASGSGS  60
LDGEEGGSSS MAAGNRWPRE ETLALLKIRS DMDAAFREAA LKGPLWEQVS RRIGEMGYKR  120
SAKKCREKFE NVDKYYRRTK DGRAGRAHGK TYRFFSELEA LHSISMSSSA AAHPPPLPAV  180
APPPPPTKLL AAPSPLPAMA APSLSSLGGG SDGSETDDDE IAAEGGKKRK RGSSWSDITS  240
SSSGKKQAGT MRLFEGMMRQ VMERQEAMQR RLLDAIERRD QERLAREESW RRQENARLAR  300
EQDALAHDRA AAAARDAAVV SFIHRVTGQM PVPPPAPETK TTTKAAMLKP PPPLQPTTPR  360
NQPQQPHVAM PMPAPASAPA RAETPPAAQS KEVAAVGADT AAAGSRWPKA EVHALIELRT  420
EMEARYGGGG GHEAPNKGPL WEDIAAGMRR LGYARSSKRC KEKWENINKY FKKVKESSRS  480
KQRPVDSKTC PYFHQLDKLY RTKAQQHASA AASQSPAAPM AAVPLSSQTP APHIVEHGPG  540
KNCTYGNGKG NGMQAVKASN GNAAERFFPS VVESAGGNGT PANKLESKQD GTIAKETTEQ  600
QPQPAGIPMV PMSNNLHNYG NGRTAEVMHH GMDDDSDSME DDDDLDSEED EDDAVGGGRN  660
AQVQPYDIRF QSQQQQQQHQ NTNGGGNPPA APASAAASGA APAPFLAMVQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G012400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2418001e-111AK241800.1 Oryza sativa Japonica Group cDNA, clone: J065208I24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230299.10.0trihelix transcription factor GTL1
TrEMBLA0A0Q3KIH60.0A0A0Q3KIH6_BRADI; Uncharacterized protein
STRINGBRADI1G77610.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-38Trihelix family protein