PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G020000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 242aa    MW: 25547.7 Da    PI: 4.9578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G020000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-153994155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr++   grWv+e+r+p   g   kr +r++lg++ +ae A +a++aa++ l+g
  Brast02G020000.1.p 39 PVYRGVRRRGLAGRWVCEVRVP---GagcKRgQRVWLGTHLSAEAAGRAHDAAMLMLRG 94
                        68*******************9...4445557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-113994IPR001471AP2/ERF domain
PROSITE profilePS5103219.42740105IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-1240106IPR016177DNA-binding domain
SMARTSM003809.7E-1240111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2140107IPR001471AP2/ERF domain
CDDcd000184.82E-1641107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDGSCQSTSL TSSHGQDAAA SWPPKRPAGR TKFKETRHPV YRGVRRRGLA GRWVCEVRVP  60
GAGCKRGQRV WLGTHLSAEA AGRAHDAAML MLRGAAPGAR ILNFPDSEWL LDVPLACPGG  120
LPSVRRAAAA AVAGFQRREP ASNGAAVPDL DEAAASWAAP RLLPRGADNG GMPLLPSLDF  180
EVPDAAGMFE LDDICGETDL DMYYAELAEG LLMEPPPDAG PAGWQSGDGR VADDDDLWSC  240
Y*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G020000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562170.11e-87dehydration-responsive element-binding protein 1H
SwissprotA2Z3889e-47DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0909e-47DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLI1HAE13e-86I1HAE1_BRADI; Uncharacterized protein
STRINGBRADI1G77120.15e-87(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-30C-repeat-binding factor 4