PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G031500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 228aa    MW: 25374.7 Da    PI: 8.48
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G031500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.97e-184717312127
                 NAM  12 eelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk 95 
                           lv +yL ++v+++++   ++i+e+d+y+++P  L +      +++++ ++wyfFs+    + ++krk+  + ++g W++    ++v++ 
  Brast02G031500.1.p  47 TKLVRDYLIPRVSSDEVVPVTFIHECDVYTADPAVLTNrykscfSIDGRPESWYFFSPLPLMNGKKKRKRSvQNSEGWWQSDHAPHKVVVC 137
                         679*************666699**************863556544445777***********99999999856669****99999999887 PP

                 NAM  96 ...kgelvglkktLvfykgrapkge.ktdWvmheyr 127
                            k+ ++g ++ L+f +++a+ g  ++ W+mhe +
  Brast02G031500.1.p 138 ggeKEVVIGYRQRLAFSTKDARGGIdRSGWLMHELS 173
                         5555556**********9888877549*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.76536189IPR003441NAC domain
PfamPF023656.8E-1145172IPR003441NAC domain
SuperFamilySSF1019411.96E-2147188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAVVTSPVS CPRSEEHSPA SFPKPSLLHD AGADLPVDTT SSAPWVTKLV RDYLIPRVSS  60
DEVVPVTFIH ECDVYTADPA VLTNRYKSCF SIDGRPESWY FFSPLPLMNG KKKRKRSVQN  120
SEGWWQSDHA PHKVVVCGGE KEVVIGYRQR LAFSTKDARG GIDRSGWLMH ELSADRDDAA  180
VALCWVYRRP RRKGDAPARE GERDERLKLP QMGNLGGLHL GQGQQQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116KKRKRS
2188192RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G031500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972