PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G039100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 223aa    MW: 23484.4 Da    PI: 9.0212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G039100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.64.1e-19118152135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+ +Tp+WR gpdg++tLCnaCG++++  +l
  Brast02G039100.1.p 118 CTHCGSEETPQWRLGPDGPRTLCNACGVRFKTGRL 152
                         *******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.978112148IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-16112162IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-15114176No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14115150IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.72E-14117166No hitNo description
PROSITE patternPS003440118143IPR000679Zinc finger, GATA-type
PfamPF003203.5E-17118152IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAGGGHVDKD AAALAAQDLP GLNVFFDHTG LETAAGGEGE GGEEEEELEW LSNKDAFPSV  60
ETMAVEAEEA ALAAPSRAAV GPRTKGVRRR RRVTAPWNVL TPAVLPPPAA AGGPKRRCTH  120
CGSEETPQWR LGPDGPRTLC NACGVRFKTG RLVPEYRPAK SPTFSPLLHS NSHRRVLEMR  180
RRNQDLEGDG TPRATAAARR ASRAAARLAA KADADAAPAK TA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G039100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562098.13e-94GATA transcription factor 4
TrEMBLI1H9U08e-93I1H9U0_BRADI; Uncharacterized protein
STRINGBRADI1G75420.11e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-36GATA transcription factor 1