PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G057700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 332aa    MW: 36510.8 Da    PI: 6.6184
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G057700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.2e-18113166356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Brast02G057700.1.p 113 KKRRLNVEQVRTLEKNFELANKLEPERKIQLARALGLQPRQVAIWFQNRRARWK 166
                         4568999**********************************************9 PP
2HD-ZIP_I/II129.81.1e-41112202191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
  Brast02G057700.1.p 112 EKKRRLNVEQVRTLEKNFELANKLEPERKIQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALISHNKKLQSEI 202
                         69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1993169IPR009057Homeodomain-like
SuperFamilySSF466892.69E-19103170IPR009057Homeodomain-like
PROSITE profilePS5007117.086108168IPR001356Homeobox domain
SMARTSM003896.2E-17111172IPR001356Homeobox domain
CDDcd000866.56E-17113169No hitNo description
PfamPF000462.9E-15113166IPR001356Homeobox domain
PRINTSPR000311.7E-5139148IPR000047Helix-turn-helix motif
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5148164IPR000047Helix-turn-helix motif
PfamPF021831.6E-15168207IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASNGMASSP SAFFPPNFLL HMQQTPPVVH HDPEEHHHHH HEHHLLPPPP HHGGHPHNPF  60
LPPSSLQDFR GMAPMLGKRP AMYGGEGGGE DVNGGGANEE EMSDDGSQAG GEKKRRLNVE  120
QVRTLEKNFE LANKLEPERK IQLARALGLQ PRQVAIWFQN RRARWKTKQL EKDYDVLKRQ  180
FDAVKAENDA LISHNKKLQS EILGLKGCSR EAASELINLN KETEASCSNR SENSSEINLD  240
ISRTPPPSEG GPMDAPPHQN GGGMIPFYPS AVVARPGAGV DIDQLLQASS VPKMEQHHHG  300
GAADTPSFGN LLCGVDEPPP FWPWADHQHF H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G057700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590410.0AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597470.0AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662450.0AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558711.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-137HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLI1H9760.0I1H976_BRADI; Uncharacterized protein
STRINGBRADI1G73190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-80HD-ZIP family protein