PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G058200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 163aa    MW: 18145.7 Da    PI: 9.1691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G058200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06901291554
                         HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +i +  ++L++llP+a   ++ ++  + +L++++ YI+sL
  Brast02G058200.1.p  90 QISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCSYIRSL 129
                         789999*********8899*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-774148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.75675129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-889150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MHACTLSRTQ SHLLYWPPSR LSHQHFFSCC SKLPPHLQGQ CTSSMTLSAS TSTSHICTLA  60
RQLLALTLSK MSSRRSRSRQ SGSSRITDEQ ISDLVSKLQD LLPEARLRSN DRVPSSRVLQ  120
ETCSYIRSLH REVDDLSERL SELLATSDMS SAQAAIIRSL LM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G058200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1014851e-114FP101485.1 Phyllostachys edulis cDNA clone: bphyst035e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752677.12e-55transcription factor ILI6 isoform X3
RefseqXP_024313620.12e-55transcription factor ILI6 isoform X3
TrEMBLA0A0Q3LJH93e-45A0A0Q3LJH9_BRADI; Uncharacterized protein
STRINGBRADI1G73160.16e-55(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26753378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-33bHLH family protein