PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G059900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 116aa MW: 12657.5 Da PI: 10.5952

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G059900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	72	9e-23	7	55	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 v+Y +ClkNhA++lGgh +DGC f+p ++ +C ACgCHR FHRr + Brast02G059900.1.p 7 VKYLDCLKNHAVALGGHRLDGCPQFVPPV-----GDSPNCVACGCHRAFHRRVE 55 79***********************93.....3689************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-11	4	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.3E-19	7	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.1E-19	8	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.776	9	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MSNSFIVKYL DCLKNHAVAL GGHRLDGCPQ FVPPVGDSPN CVACGCHRAF HRRVEFEVRV 60 SLAQVQPMQA ASTSAVTTNA PQLGFWRPER RIQHSSTSRS SARRVIKPPR SSTCP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G059900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0Q3P038	2e-34	A0A0Q3P038_BRADI; Uncharacterized protein
STRING	BRADI1G73020.1	6e-17	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP37168	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60480.1	3e-16	homeobox protein 26

Link Out ? help Back to Top
Phytozome	Brast02G059900.1.p