PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G060000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 75aa MW: 8207.81 Da PI: 8.9593

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G060000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	57.2	3.9e-18	8	51	2	50
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHR 50 +k++Y +ClkNhA++ G h vDGC Ef+p g+ l C ACgCHR Brast02G060000.1.p 8 KKMVYLDCLKNHAVAPGRHCVDGCMEFVPPMGN-----NLSCVACGCHR 51 5789***********************9555.....5*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-8	5	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.5E-13	10	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	18.544	12	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MAFVVSVKKM VYLDCLKNHA VAPGRHCVDG CMEFVPPMGN NLSCVACGCH RGCHRDFHRR 60 LLVKVRVPVS VSQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G060000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230247.1	1e-27	zinc-finger homeodomain protein 2
TrEMBL	I1H956	3e-26	I1H956_BRADI; Uncharacterized protein
STRING	BRADI1G73020.1	5e-27	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP49958	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-13	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Brast02G060000.1.p