PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G060100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 190aa    MW: 21397 Da    PI: 10.4544
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G060100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer45.61.7e-14956257
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        +k++Y eCl+Nh a+ G      C  f++        ++ +C ACgCHR+FHRr +
  Brast02G060100.1.p  9 KKATYLECLRNHPAAQGQG---SCTAFVQPA-----GNSPNCVACGCHRSFHRRVM 56
                        5789**********99975...5*****983.....35799*************86 PP
2Homeobox16.91.1e-05108165154
                         TT--SS--HHHHHHHHHHHHH..SSS--H..HHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFek..nrypsa..eereeLAkklgLterqVkvWFqNrRak 54 
                         rr+Rt+ft++q e ++el e+   ry+++  +++ee  +++g++ r  k+W  N R k
  Brast02G060100.1.p 108 RRTRTNFTEQQKEKMQELSERigRRYLKRdlATIEEGCREIGVSSRSFKNWMDNTRRK 165
                         89******************7779**976226999999******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-6154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.0E-101155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152310.9171355IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.82E-11101165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-18103165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTAQVEESKK ATYLECLRNH PAAQGQGSCT AFVQPAGNSP NCVACGCHRS FHRRVMFDVS  60
VSVSPTPQPQ PSEDSSDTES DVQRSFPPPQ QQRPAPAPMM VVAPEQVRRT RTNFTEQQKE  120
KMQELSERIG RRYLKRDLAT IEEGCREIGV SSRSFKNWMD NTRRKNLVDA RRRASVSANK  180
QRRNTTSRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162172RRKNLVDARRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G060100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230244.11e-61zinc-finger homeodomain protein 9
TrEMBLA0A0Q3K0M25e-61A0A0Q3K0M2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2275625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.17e-18homeobox protein 30