PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G060300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 206aa    MW: 21787.9 Da    PI: 8.4976
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G060300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer51.42.6e-16954352
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnF 52
                        ++rY  C++NhAa+l gh +DGC  f+p +      ++l+C ACgCH nF
  Brast02G060300.1.p  9 GARYLHCMRNHAAALNGHCLDGCTAFLPPPVG----DSLHCYACGCHPNF 54
                        689*************************9444....6************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.7E-131054IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-81154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.6831258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.86E-5117166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-10118167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSDVVSAKGA RYLHCMRNHA AALNGHCLDG CTAFLPPPVG DSLHCYACGC HPNFPLYVPA  60
VPPPPQLQPM MAAASGSDAD TVPPPPPRQQ LLPLPAPAPA LVAAPPQQQP APVPAPPAQK  120
TKMWELSERI GWSYHQRNMA AIEEGCREMD VTIRTFKNWM GNNKRKNQIE ARRRASDNNN  180
ATPQAAASSS SPAGLAVPPS PPASA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G060300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230244.17e-42zinc-finger homeodomain protein 9
TrEMBLA0A0Q3K0M22e-40A0A0Q3K0M2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2275625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-11zinc finger homeodomain 1