PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G060400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 231aa    MW: 25415.8 Da    PI: 9.9847
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G060400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer54.33.2e-17961357
         ZF-HD_dimer  3 kvrYkeClkNhAaslG...ghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        k++Y +ClkNhA+ lG   g   DGC+ f++        + l C  CgCHR++HRr +
  Brast02G060400.1.p  9 KATYLDCLKNHAVVLGqvvGDRQDGCRQFVQPA-----GNCLDCVSCGCHRSWHRRVM 61
                        689***********9944456689******983.....358***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-131160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-61159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152314.6781260IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.6E-7126188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-14127189IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSDVVSFRKA TYLDCLKNHA VVLGQVVGDR QDGCRQFVQP AGNCLDCVSC GCHRSWHRRV  60
MFDVSVSVSP TPQPLPRQRQ GVPAAVPSED SSATESDTNA VQRLVPPPQQ QQRPAPVAAA  120
PMMVVAPEQV RRPPTYFSQE KKARMWELSE RIGWRYEQRN LATIEAGCRE IGVTCRAFKN  180
WMNNTKSKNH IRAHPRASVS ANNNNNNNNI TPPAAARSTP TLPPPPPAST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G060400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230244.14e-76zinc-finger homeodomain protein 9
TrEMBLA0A0Q3K0M28e-75A0A0Q3K0M2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2275625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.14e-22homeobox protein 30