PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G066800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 250aa    MW: 26443 Da    PI: 6.8619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G066800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-194995148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEde+l   vk++G ++W+ I+  ++ gRt+k+c+ rw ++l
  Brast02G066800.1.p 49 KGPWSPEEDEQLTSMVKKHGADHWSYISTGVP-GRTGKSCRRRWCNHL 95
                        79******************************.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.9354499IPR017930Myb domain
SuperFamilySSF466892.08E-1746115IPR009057Homeodomain-like
SMARTSM007173.8E-154897IPR001005SANT/Myb domain
PfamPF002494.0E-174995IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2050112IPR009057Homeodomain-like
CDDcd001678.57E-165195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPQSFLLYAC VLLLAASTLP ISCSSLQPIH KSPAISQYCS HKQAPPMGKG PWSPEEDEQL  60
TSMVKKHGAD HWSYISTGVP GRTGKSCRRR WCNHLSLAVQ DPRPFTAEEH ALSIRESQCQ  120
SAAAQFAHTN VAAAASAAAA AAENNLPVWG KGKAVVIDVE DDEPPPAKRQ RVSNEGGGTS  180
AGGDADAWLT LSLGMPLQQQ PVEQAPVAPV ATETPAVMAA MREMVSAEVE RQARQLVVSV  240
FMAARGGQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G066800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3LJ835e-89A0A0Q3LJ83_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4995722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-21myb domain protein r1