PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G068700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 236aa MW: 26564.4 Da PI: 9.0509

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G068700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.5e-16	135	225	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v + +l lp +f++++ +k+ t+tl de+ +++e ++ ++++ l++GW +F+ ++g+ +gD+ vF+l++ ++f Brast02G068700.1.p 135 FVKRMLHSHVVRGFWLGLPSHFCDSYL-PKHD-STITLVDEKDEEFETNY--LAYKKG--LSGGWAGFALSHGILDGDSAVFQLIKPTTF- 218 89**********************4.3434.49***********..555555..9*********************986777. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v+++r+ Brast02G068700.1.p 219 -KVHIIRA 225 .9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-18	126	226	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-23	128	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.94E-24	133	224	No hit	No description
PROSITE profile	PS50863	11.632	135	226	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.4E-15	135	225	IPR003340	B3 DNA binding domain
SMART	SM01019	7.3E-17	135	226	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MAIEKGMSPY EAVRERTVQE NKRKMEALNL HHLSAAVAHA PKTPSPMKHK RRRIIEAAVP 60 APSPPRRSRR LAHLPEVKYA EVAPDSERMK RWSPRKPAEI MCWGSGGSIS MEARLEAARK 120 AEELESQLDP EFPSFVKRML HSHVVRGFWL GLPSHFCDSY LPKHDSTITL VDEKDEEFET 180 NYLAYKKGLS GGWAGFALSH GILDGDSAVF QLIKPTTFKV HIIRATVDDD NKESE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	53	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G068700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229077.1	1e-166	B3 domain-containing protein Os03g0184500
Swissprot	Q10QS9	1e-138	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	I1H8X5	1e-165	I1H8X5_BRADI; Uncharacterized protein
STRING	BRADI1G72330.1	1e-166	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	Brast02G068700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]