PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G075100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 277aa    MW: 30176.1 Da    PI: 5.896
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G075100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19107156255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a++aa+ +l+g
  Brast02G075100.1.p 107 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDAAEEAALAYDAAAFRLRG 156
                         59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.81E-20106166No hitNo description
SMARTSM003803.4E-37107170IPR001471AP2/ERF domain
PROSITE profilePS5103223.248107164IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22107165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-32107165IPR001471AP2/ERF domain
PfamPF008471.1E-13108156IPR001471AP2/ERF domain
PRINTSPR003671.4E-10108119IPR001471AP2/ERF domain
PRINTSPR003671.4E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MATTVDWRSC NPDLPAATYY YNMVESREVM QAALAPSMAR QGAMAPTISF SSYPCSGLEQ  60
SASYFTPAQI LQLQPQLHRR PPAAAMAMAA VPQPMKRHGV AAAASKLYRG VRQRHWGKWV  120
AEIRLPRNRT RLWLGTFDAA EEAALAYDAA AFRLRGDSAR LNFPELRRGG AHHGPPLHPS  180
IEAKLHAICD LPPPQSDATP TPSPLPDVVK SEFPGCCSGS EMSSSSADCE VSSTGSSDVV  240
PEMQLLDFSE APWDESESFV LRKYPSEEID WDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20103164163ATERF1
3gcc_A5e-20103164163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G075100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588231e-107AK358823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1083M18.
GenBankAK3701701e-107AK370170.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558614.11e-143ethylene-responsive transcription factor ERF060
TrEMBLI1H8Q41e-142I1H8Q4_BRADI; Uncharacterized protein
STRINGBRADI1G71740.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-42ERF family protein