PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G080500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 242aa    MW: 26224.2 Da    PI: 6.9671
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G080500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-1863116356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq + Le  F+k++++ + ++ +LA++lgL+++qV vWFqNrRa++k
  Brast02G080500.1.p  63 KKRRLSDEQAQFLELSFRKESKLETPRKLQLAAELGLDTKQVAVWFQNRRARHK 116
                         45689***********************************************99 PP
2HD-ZIP_I/II112.23.4e-3663154293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrls+eq+++LE sF++e+kLe+ rK +la eLgl+++qvavWFqnrRAR+k+k++E++y++L++a+da++ +n++Le+e  +L+e+l+
  Brast02G080500.1.p  63 KKRRLSDEQAQFLELSFRKESKLETPRKLQLAAELGLDTKQVAVWFQNRRARHKSKRMEEEYNKLRAAHDAVVVHNCHLEAELLRLKERLA 153
                         9**************************************************************************************9997 PP

         HD-ZIP_I/II  93 e 93 
                         e
  Brast02G080500.1.p 154 E 154
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.27758118IPR001356Homeobox domain
SMARTSM003891.4E-1561122IPR001356Homeobox domain
SuperFamilySSF466898.98E-1762127IPR009057Homeodomain-like
CDDcd000862.95E-1463119No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1663116IPR009057Homeodomain-like
PfamPF000465.9E-1663116IPR001356Homeobox domain
PRINTSPR000317.5E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000317.5E-698114IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRPEEEERLP FPSSFVFPES FPAQADTPTS GGEQKKAGRQ RRRRKARQAA AGGDGGAGDD  60
AAKKRRLSDE QAQFLELSFR KESKLETPRK LQLAAELGLD TKQVAVWFQN RRARHKSKRM  120
EEEYNKLRAA HDAVVVHNCH LEAELLRLKE RLAEADEEKK LMAASAAAAA AAATGGGGGG  180
GSSSPSSSSF STVTQLMGQF GMEDAADQAD LTYMSEYAYN SYMMDLAGAS GYLGGVYDQF  240
S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G080500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558578.11e-117homeobox-leucine zipper protein HOX12
SwissprotA2XDK59e-86HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLI1H8J61e-115I1H8J6_BRADI; Uncharacterized protein
STRINGBRADI1G71280.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-29homeobox protein 40