PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G093600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 291aa    MW: 32104 Da    PI: 7.7696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G093600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-15251061198
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          k    ++p kfa + +g   e+++l+l+   g  r W+v + ++++++ ++lt+GW +F++a+gL  g f+vF++dg s     v+vf+
  Brast02G093600.1.p  25 EK---QRMPAKFACALDGR--EPRELKLREAGGggRLWDVDVDFDGQGR-MYLTRGWAQFARAHGLGLGSFLVFTYDGGSAL--AVRVFD 106
                         33...36899**9777777..55578888866666*******9998875.579***********************985555..999987 PP
2B337.93.1e-121952681687
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFk..ldgr 87 
                         l +p +f  + g+  +++  + l+  +gr W+vkl+     +++ r+ l+ GW +F+ +n+L +gD++ F+  + g+
  Brast02G093600.1.p 195 LNVPVEFQVAQGYAGRSK--VELRM-RGRAWSVKLKQgvcANRQPRTSLRYGWHQFCVDNRLAVGDTCFFRvlHPGD 268
                         566777765665553344..44433.78*******8878755555699***********************542233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.71912108IPR003340B3 DNA binding domain
CDDcd100171.35E-1613106No hitNo description
SuperFamilySSF1019363.53E-1814110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-1815109IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-915108IPR003340B3 DNA binding domain
PfamPF023628.4E-1317106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-19175285IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.18178285IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-11178267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589180285IPR003340B3 DNA binding domain
PfamPF023621.4E-9212265IPR003340B3 DNA binding domain
CDDcd100178.85E-7219262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEEENPSPDL SGFEFFTVIL ENSLEKQRMP AKFACALDGR EPRELKLREA GGGGRLWDVD  60
VDFDGQGRMY LTRGWAQFAR AHGLGLGSFL VFTYDGGSAL AVRVFDVTMC RKRFQREKQG  120
GDDQGDDAGF GFGFGFDSPP LSSPGSGSGS CRGGGSGSGS DTAEMDGAGD DDVPKSRFSV  180
MLRQCHFGLR QKQYLNVPVE FQVAQGYAGR SKVELRMRGR AWSVKLKQGV CANRQPRTSL  240
RYGWHQFCVD NRLAVGDTCF FRVLHPGDDD GEERHVLKVE VRRRDGSFVK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G093600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561895.11e-142B3 domain-containing protein Os03g0212300
TrEMBLI1H8501e-141I1H850_BRADI; Uncharacterized protein
STRINGBRADI1G70067.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-13B3 family protein