PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G103200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WOX

Protein Properties

Length: 162aa MW: 18505.9 Da PI: 8.2521

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G103200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.1e-21	64	124	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p ++++++++++l +++e++V++WFqNrRa+ k+ Brast02G103200.1.p 64 RQRWAPTQMQLQILESIFDQgNGTPRKQKIKDITAELsqhgNISETNVYNWFQNRRARSKR 124 89***************99************************************97 PP
2	Wus_type_Homeobox	100.4	1.3e-32	63	126	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Pt+ Q++iLe+++++G tP k++i++itaeL+++G+i+++NV++WFQNr+aR+++k+ Brast02G103200.1.p 63 ARQRWAPTQMQLQILESIFDQGNGTPRKQKIKDITAELSQHGNISETNVYNWFQNRRARSKRKK 126 789***********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-16	58	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.495	60	125	IPR001356	Homeobox domain
SMART	SM00389	1.3E-11	62	129	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	63	127	IPR009057	Homeodomain-like
Pfam	PF00046	9.8E-19	64	124	IPR001356	Homeobox domain
CDD	cd00086	8.95E-12	64	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEVMTDEQME VLRKQISIYF TICEQIVGIH RTITSHQDSI AGMRLGNLYC DPLMVHGGHK 60 ITARQRWAPT QMQLQILESI FDQGNGTPRK QKIKDITAEL SQHGNISETN VYNWFQNRRA 120 RSKRKKSAFV PNNAESEAEA DEESPTEKKP KSDGPLHQNI W*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G103200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564486.1	3e-95	WUSCHEL-related homeobox 8
Refseq	XP_020188039.1	2e-95	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-89	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A287LWF2	1e-96	A0A287LWF2_HORVV; Uncharacterized protein
TrEMBL	M0X0X0	2e-96	M0X0X0_HORVV; Uncharacterized protein
STRING	MLOC_56124.2	3e-97	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-56	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Brast02G103200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]