PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G103800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 269aa    MW: 28877.3 Da    PI: 6.5146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G103800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74e-18106160256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Brast02G103800.1.p 106 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 160
                         788899***********************************************98 PP
2HD-ZIP_I/II125.52.4e-40106195191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  Brast02G103800.1.p 106 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQRELHELR-AL 195
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1798161IPR009057Homeodomain-like
SuperFamilySSF466898.13E-19100163IPR009057Homeodomain-like
PROSITE profilePS5007117.232102162IPR001356Homeobox domain
SMARTSM003897.8E-16104166IPR001356Homeobox domain
PfamPF000461.8E-15106160IPR001356Homeobox domain
CDDcd000862.34E-16106163No hitNo description
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PfamPF021837.7E-11162196IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-22162205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAQEEAHEAG LALGLSLGGG GGDSSRRRRR EASSSQQCPL EPSLTLSMPD DAATSGGGGV  60
SSMPAVKRER AEEEEEEEAA EMVSSTALQA AFAGAGAEDD DDGSTRKKLR LTKEQSALLE  120
DRFKEHSTLN PKQKVALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKRCCENLTE  180
ENRRLQRELH ELRALKFAPP PPPPSAAAAP PPFYMQLPAA TLTICPSCER LGGSTAAANA  240
AAAAGDSDVR PKGGTHHFFN PFTHSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110TRKKLRL
2154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G103800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-143FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558432.11e-119homeobox-leucine zipper protein HOX19
SwissprotA2XE761e-106HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-106HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLI1H7T31e-118I1H7T3_BRADI; Uncharacterized protein
STRINGBRADI1G69150.11e-119(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-65homeobox from Arabidopsis thaliana