PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G110500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 252aa    MW: 27216.7 Da    PI: 7.6117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G110500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.24e-132574348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                         W+++Ed  l + v+++G  +W+++a+ +     ++Rt k+c++rw+++l
  Brast02G110500.1.p 25 MWSEDEDRVLREQVRLHGAQSWDKVAEALEqalpNHRTSKSCRLRWYQHL 74
                        5**********************************************996 PP
2Myb_DNA-binding46.87e-1583125347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T +Ed+l++++ + +G++ W+tIa  +  gRt++ +k+rw+++
  Brast02G110500.1.p  83 PFTRDEDKLIIHYQAIHGNR-WSTIAGFLS-GRTDNAVKNRWNSV 125
                         89******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.0551878IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-152277IPR009057Homeodomain-like
SMARTSM007172.5E-122276IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-2722122IPR009057Homeodomain-like
PfamPF002494.0E-122574IPR001005SANT/Myb domain
CDDcd001671.13E-112674No hitNo description
SMARTSM007174.6E-1280128IPR001005SANT/Myb domain
PfamPF002492.4E-1283126IPR001005SANT/Myb domain
CDDcd001673.53E-1183126No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1883127IPR009057Homeodomain-like
PROSITE profilePS5129415.12583130IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSSTPGTSGS GGGHPPHRHV SKKTMWSEDE DRVLREQVRL HGAQSWDKVA EALEQALPNH  60
RTSKSCRLRW YQHLDPKVDA VKPFTRDEDK LIIHYQAIHG NRWSTIAGFL SGRTDNAVKN  120
RWNSVLKCHA RAPSAEHPRP PCAAARRAAG AELTPGCLPL FPLASGDVRQ HGSGPWPGVF  180
MPQASEEDVS EVETGTCLEL FSLAPGDIRN NAGAAASKGM SCGAGDPLTE LRLGSAAVEV  240
FDVMPLQAYP M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-212612710105B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G110500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561848.11e-146transcription factor MYB23
TrEMBLI1H7P11e-145I1H7P1_BRADI; Uncharacterized protein
STRINGBRADI1G68800.11e-146(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-26myb domain protein 109