PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G119100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 1006aa    MW: 114765 Da    PI: 6.5631
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G119100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.94e-19108213290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek.d 73 
                          Y++YA+++GF+ ++++ ++   +g  +++tf C+++gk++  +                    +ek+ r+ ++++tgCka+l ++ ++ +
  Brast02G119100.1.p 108 LYKAYAYRMGFHAVRRTCHNY--EGLRYRSTFSCTQSGKPRAGTAPsegpsaryplrskrgaatQEKRGRRATSEKTGCKAMLIIRDKRvN 196
                         7***********999998887..7888*************99887799**************9767777788999************999* PP

                FAR1  74 gkwevtkleleHnHela 90 
                         ++w+v+ ++leHnH+++
  Brast02G119100.1.p 197 DRWKVEFVDLEHNHPCT 213
                         **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-17108213IPR004330FAR1 DNA binding domain
PfamPF105512.4E-23340434IPR018289MULE transposase domain
PROSITE profilePS509669.495622658IPR007527Zinc finger, SWIM-type
SMARTSM005750.0029633660IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MGEGSGRTRS SRAARAQNPR YQQEEEVAAA ARRVKDEIAD DLNGDPAEDE DEEEVEEGED  60
EMVVASDEDE GEADGGGGDD GFVPRTLEEA LVPRVGKVFD SVDEAFSLYK AYAYRMGFHA  120
VRRTCHNYEG LRYRSTFSCT QSGKPRAGTA PSEGPSARYP LRSKRGAATQ EKRGRRATSE  180
KTGCKAMLII RDKRVNDRWK VEFVDLEHNH PCTPDMVRFL KAYREMPESA KKKSKITDEM  240
DEMVEKSLSE IAETRKFPTR PKRSVTGGPV VAGLRFSRCD SFVQRFREDD LNAVKKFIEK  300
MQQKKPNLIH SWDLDEESRA KNFFWTDLRS QAQYRYFGDV ITLDVTYLQH SRASLPLATL  360
LGVNNHGHLV LLGCGLLSED SKENYVWLLK RWLSCMNGKA PEAITTSYSD VVAEAVAEVL  420
PNARHRFCFW HILKKLQENV GRTHEKDAIC SRFKDVVYDT VTLTDFEKEW GSMVEHYKLK  480
DNEWFSALYS CRKQWAPGYV NHSFWAGTSA IRKVEKPDPY FDGAVTTKTT LPVFLEQYET  540
TLKGKLEREA YDDLRSYYSR LTLLSGLPFE EQLVELYTVP MFQAFQDEIK QLMHVICKEV  600
DRSGNSVTYM VSELIQGKKV DYTVVYNNSD KDVWCICRSF PSRGILCSHA LSVLKQENVL  660
MLPSKYILNR WRKDFRILNT PASSSSVALV RELSIFDDLY VRGHEYLEDA IDIGAREPEL  720
KEFVLSAMKE AKDKLIRVDQ IQQSDQRVDV NMALTGQPST DRRVDVNMTS NTTPLIHGDR  780
MVDANMTLNT RVLVHGDIMT SNTTSMIHGD RRVDMEMQTP HLIHAEGRVD MNMASPHLMQ  840
RDRRVDMNMS SPHLIQGDRR VDRNLGLPHF IQSDRRVDMN LASPHLIHGD RRVDMNMASP  900
HLVHGDRRVD MNMASPHMMQ GDTRVDMNMV STAQDDGMHT FDLVNVNLEG GSLPMTATDF  960
MQMHPHPTVY HPKQLLSMRD QVIDSNKRPN VETNTYFMGG GMHVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G119100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752206.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1H7C20.0I1H7C2_BRADI; Uncharacterized protein
STRINGBRADI1G67770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.15e-85FAR1-related sequence 6