PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G121200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 217aa    MW: 23373.1 Da    PI: 6.1056
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G121200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.1e-16121155135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC+t++Tp W++gp+g+k+LCn C ++++k+++
  Brast02G121200.1.p 121 CANCRTSSTPFWHNGPRGPKSLCNTCVIRFKKEER 155
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-9114154No hitNo description
SMARTSM004012.7E-9115167IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.396115151IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-11115155IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.7E-13121155IPR000679Zinc finger, GATA-type
CDDcd002022.24E-9121152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MASNTFPLFF PPMPVKAAAG QQWPPAEQAA SYEDLSSAVT SPSSPFSDDS SAGSLLVDCT  60
LSLGTPSSCA HRVSEPVSAD VDSCYRFYQQ QQSMPAAGIG MAGVWSGGHE QQQQEEDRRC  120
CANCRTSSTP FWHNGPRGPK SLCNTCVIRF KKEERRAAET GGCGLPLRGA QRVAAAPIAR  180
RAAHEEPFLE LEWRLLNAVP DSPAVWPAER ASLQYQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G121200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7222064e-32GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565832.13e-68GATA transcription factor 15
TrEMBLA0A0Q3QT276e-67A0A0Q3QT27_BRADI; Uncharacterized protein
STRINGBRADI2G14890.16e-68(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.16e-21GATA transcription factor 20