PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G124500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 257aa    MW: 26908.7 Da    PI: 4.9564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G124500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1852101255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  Brast02G124500.1.p  52 QYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 101
                         69****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-2951111IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1952110IPR016177DNA-binding domain
SMARTSM003801.3E-3452115IPR001471AP2/ERF domain
CDDcd000182.60E-1852109No hitNo description
PROSITE profilePS5103221.77352109IPR001471AP2/ERF domain
PfamPF008474.7E-1152101IPR001471AP2/ERF domain
PRINTSPR003676.0E-85364IPR001471AP2/ERF domain
PRINTSPR003676.0E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MQDLIKCQAG GARGTMVKNY RCEYDGAAAA ALCGGGSRLQ QQPAAAVVSS RQYKGVRMRS  60
WGSWVSEIRA PHQKRRIWLG SYATPEAAAR AYDAALLCLK GSHAVLNFPS SSSSSSKYSV  120
ADDMSPRSIQ RAAAAAAAAF EATRVVVAED SCSSSSADVV TTASAESTLM GSAGDVRQEG  180
HQATTPTSSS AAASENGSPD QGDEGDRLWK ELVDGFASSP KLMDLIAAGQ GTPFSSSGWE  240
EPEEDDGEMM RLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-13521161479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G124500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3567331e-78AK356733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1039C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228833.11e-95ethylene-responsive transcription factor ERF014
SwissprotQ9SFE42e-36ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLI1H7752e-94I1H775_BRADI; Uncharacterized protein
STRINGBRADI1G67350.14e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.18e-23ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]